Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHEDD
4TOD Chain:B ((3-156))
--GDKKVIQHLNKILGNELIAINQYFLHSRMWNFWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHE--
General information:
TITO was launched using:
RESULT:
Template:
4TOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40175 for 1166 contacts (-34.5/contact) +
2D Compatibility (PS) -16982 + (NN) -11919 + (LL) 120
1D Compatibility (HY) -23600 + (ID) 7650
Total energy: -100206.0 ( -85.94 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_4TOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TOD-query.scw
PDB file :
Tito_Scwrl_4TOD.pdb
: