Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------MSLGVIAAAIAVGLGALGAGIGNGLIVSKTVEGVARQPEARSMLQSIMFVGVALVEALPIIAVVIAFMVLNK--------
1YCE Chain:A ((1-89))
MDMLFAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVGLLG
General information:
TITO was launched using:
RESULT:
Template:
1YCE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33337 for 403 contacts (-82.7/contact) +
2D Compatibility (PS) -7545 + (NN) -2955 + (LL) 0
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -48687.0 ( -120.81 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_1YCE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCE-query.scw
PDB file :
Tito_Scwrl_1YCE.pdb
: