Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIIEGKLQLQGNEKIAILTSRFNHIITDRLKEGAMDCFKRHGGDEELLDLVLVPGAYELPLILDKLLESGKYDGVCVLGAIIRGGTPHFDYVSAEATKGIASAMLKYSMPVSFGVLTTDNIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLKD
1RVV Chain:? ((1-154))
MNIIQGNLVGTGL-KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSFE-
General information:
TITO was launched using:
RESULT:
Template:
1RVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112208 for 1284 contacts (-87.4/contact) +
2D Compatibility (PS) -17295 + (NN) -11102 + (LL) 28
1D Compatibility (HY) -10400 + (ID) 3800
Total energy: -154777.0 ( -120.54 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1RVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RVV-query.scw
PDB file :
Tito_Scwrl_1RVV.pdb
: