Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNLALWSRPVWDVEPWDRWLRDFFGPAATTDWYRPVAGDFTPAAEIVKDGDDAVVRLELPGIDVDKDVNVELDP-GQPVSRLVIRGEHRDEHTQDAGDKDGRTLREIRYGSFRRSFRLPAHVTSEAIAASYDAGVLTVRVAGAYKAPAETQAQRIAITK
1GME Chain:A ((40-150))
--------------------------------------AFANARMDWKETPEAHVFKADLPGVK-KEEVKVEVEDGN----VLVVSGERTKEKEDK---NDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP--EVKAIQIS-
General information:
TITO was launched using:
RESULT:
Template:
1GME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41663 for 624 contacts (-66.8/contact) +
2D Compatibility (PS) -11737 + (NN) -5119 + (LL) 2860
1D Compatibility (HY) -5600 + (ID) 1550
Total energy: -62809.0 ( -100.66 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1GME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GME-query.scw
PDB file :
Tito_Scwrl_1GME.pdb
: