Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYRPARVTSTSRFLNPYVVCFIVVAGVVILAVTIALLVYFLAFDQKSYFYRSSFQLLNVEYNSQLNSPATQEYRTLSGRIESLITKTFKESNLRNQFIRAHVAKLRQDGSGVRADVVMKFQFTRNNNGASMKSRIESVLRQMLNNSGNLEINPSTEITSLTDQAAANWL---INECGAGPDLITLSEQRILGGTEAEEGSWPWQVSLRLNNAHHCGGSLINNMWILTAAHCF--RSNSNPRDWIATSGISTTFPK-LRMRVRNILIHNNY------KSATHENDIALVRLENSVTFTKDIHSVCLPAATQNIPPGSTAYVTGWGAQEYAGHTVPELRQGQVRIISNDVCNAPHSYNGAILSGMLCAGVPQGGVDACQGDSGGPLVQEDS---RRLWFIVGIVSWGDQCGLPDKPGVYTRVTAYLDWIRQQTGI |
| 1Z8G Chain:A ((88-357)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------EVISVCDCPRGRFLAAICQDCGR----RKLP---IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQ---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Z8G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164434 for 2046 contacts (-80.4/contact) +
2D Compatibility (PS) -27427 + (NN) -15665 + (LL) 12232
1D Compatibility (HY) -26000 + (ID) 5900
Total energy: -227194.0 ( -111.04 by residue)
QMean score : 0.244
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