Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSCNFTHATFVLIGIPGLEKAHFWVGFPLLSMYVVAMFGNCIVVFIVRTERSLHAPMYLFLCMLAAIDLALSTSTMPKILALFWFDSREISFEACLTQMFFIHALSAIESTILLAMAFDRYVAICHPLRHAAVLNNTVTAQIGIVAVVRGSLFFFPL-PLLIKRLAFCHSNVLSHSYCVHQDVMKLAYADTLP---NVVYGLTAILLVMGVDVMFISLSYFLIIRTVLQ----LPSKSERAKAFGTCVSHIGVVLAFYVPLIGLS-----VVHRF-----GNSLHPIVRVVMGDIYLLLPPVINPIIYGAKTKQIRTRVLAMFKISCDKDLQAVGGK |
| 3VGA Chain:A ((14-296)) | ------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAK--GIIAICWVLSFAIGLTPMLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -242002 for 1869 contacts (-129.5/contact) +
2D Compatibility (PS) -25731 + (NN) -4354 + (LL) 4168
1D Compatibility (HY) -22400 + (ID) 3550
Total energy: -293869.0 ( -157.23 by residue)
QMean score : 0.229
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