Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYVSNCNPCAIHRKINYPNTKLDFEQVNNITEFILLGLTQNAEAQKLLFAVFTLIYFLTMVDNLIIVVTITTSPALDS-PVYFFLSFF--SFIDGCSSSTMAPKMIFDLLTEKKTISFSGCMTQLFVEHFFGGVEIILLVVMAYDCYVAICKPLYYLITMNRQVCGLLVAMAWVGGFLHALIQMLLIVWLPFCGPNVIDHFICDLFPLLKLSCTDTHVFGLFVAANSGLMCMLIFSILITSYVLILCSQRKALSTCAFHITVVVLFFVPCILVYLRPMITFPIDKAVSVFYTVVTPMLNPLIYTLRNTEVKNAMKQLWSQIIWGNNLCD |
4U15 Chain:A ((25-183)) | ---------------------------------------------------------VTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYI---IMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFV--LWAPAILFWQYFVGKRTVPPGEC----FIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKMNIFEMLRIDEGGGSGGDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRW |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4U15.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -139831 for 1003 contacts (-139.4/contact) +
2D Compatibility (PS) -15242 + (NN) 860 + (LL) 5272
1D Compatibility (HY) -14400 + (ID) 1850
Total energy: -165191.0 ( -164.70 by residue)
QMean score : 0.128
|
|
|