Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENNTEVTEFILVGLTDDPELQIPLFIVFLFIYLITLVGNLGMIELILLDSCLHTPMYFFLSNLSLVDFGYSSAVTP---KVMVGFLTGDKFILYNACATQFFFFVAFITAES-FLLASMAYDRYAALCKPLHYTTTMTTN-------VCACL--AIG-SYICGFLNASIHTGNTFRLSFCRSNVVEHFFCDAPPLLTLSCSDNYISEMVIFFVVGFNDLFSILVILISYLFIFIT----IMKMRS-PEGRQKAFSTCASHLTA---VSIFYG-----------TGIFMYLRPNSSHFMGTDKMASVFYAIVI----PMLNPLVYSLRNKEVKSAFKKTVGKAKASIGFIF |
| 3VGA Chain:A ((12-303)) | ---------------------------VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIAC------FVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ-------SQGCGEGQVACLFEDVVPM-------NYMVYFNFFACV----LVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH----APLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -193630 for 1677 contacts (-115.5/contact) +
2D Compatibility (PS) -24962 + (NN) -8349 + (LL) 3508
1D Compatibility (HY) -28400 + (ID) 3900
Total energy: -255733.0 ( -152.49 by residue)
QMean score : 0.206
|
|
|