Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACAATTS-LLACLPATQSDI--MPSATCCTQLSSYVANNGQDCLCSASTSNTARS-----DLALKLPQKCNLKFKAGTTCNVIPGGQ
2RKN Chain:A ((5-75))
-CGMSQDELNECKPAVSKENPTSPSQPCCTALQHA----DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28345 for 372 contacts (-76.2/contact) +
2D Compatibility (PS) -6519 + (NN) -3452 + (LL) 260
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -41556.0 ( -111.71 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: