Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDYLRISIGSLNEKNFHVIYTNKKYHLIAEDLQNISTIDQTSLYVKDIIKRVLLIGSTSIVISHNHSSGNTQPSSRIYPSLGS
3NPG Chain:A ((98-129))
-------------------------------DLREAKWIDVTELIQQDEIKRIAIIGNMPPVVRTLKEKYEVYVFERNMKLWDR
General information:
TITO was launched using:
RESULT:
Template:
3NPG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6936 for 113 contacts (-61.4/contact) +
2D Compatibility (PS) -3211 + (NN) 621 + (LL) 2568
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -9608.0 ( -85.03 by residue)
QMean score : 0.203
(partial model without unconserved sides chains):
PDB file :
Tito_3NPG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NPG-query.scw
PDB file :
Tito_Scwrl_3NPG.pdb
: