Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNLLKKFNEQQMQVLAKEVPEFRPGDDLKVTFKVVDSTSERIQIFEGVCISKRNRGLHSSFAVRKVSHGESIVSQFFIYSPALVSVQVTRRGKVRRAKLYYLCKLFGKAARIKERATYKNNKSN
3J8G Chain:P ((2-113))
-SNIIKQLEQEQMK---QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLNAKTIKIT
General information:
TITO was launched using:
RESULT:
Template:
3J8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41668 for 710 contacts (-58.7/contact) +
2D Compatibility (PS) -12248 + (NN) 1918 + (LL) 720
1D Compatibility (HY) -8400 + (ID) 3050
Total energy: -62728.0 ( -88.35 by residue)
QMean score : 0.253
(partial model without unconserved sides chains):
PDB file :
Tito_3J8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J8G-query.scw
PDB file :
Tito_Scwrl_3J8G.pdb
: