Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKLLALLIMFYSGISVASAPTSWQFGFPAPATEIMEVIVKSHLFVMSVMVTIMLFVWALLAYVMFRFRKSKVTNISKTHHSILLEIVWFVIPTIIVGILAFENAKLLKLQEKIPKADITLKVIGHQWYWSYRYPEYQGVSFDSYIKEKDDFVKGDLKLFSVDNNVVLPVNTNVRLQVTAGDVIHSWGVPAFGIKIDAIPGRLNEAWFNVKKPGVYYGQCYELCGQGHGFMPIVIEAVSKEDFNKWIENKKLVS
2OCC Chain:B ((6-222))
------------------------QLGFQDATSPIMEELLHFHDHTL----MIVFLISSLVLYIISLMLTTKLTHTS-TMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML---
General information:
TITO was launched using:
RESULT:
Template:
2OCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143679 for 1436 contacts (-100.1/contact) +
2D Compatibility (PS) -23888 + (NN) -15507 + (LL) 3272
1D Compatibility (HY) -26000 + (ID) 4450
Total energy: -210252.0 ( -146.42 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2OCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCC-query.scw
PDB file :
Tito_Scwrl_2OCC.pdb
: