Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSMDPIIGASSRILRSTPRKLNLVADLVRNKKVSFATVQLRFCEKKAAGLIGKVLNSAIANAQYNYGLDIDNLYIKEILIGKSFTLHRVCPKAMGRANRVSKHYSNITIKLRQIV
2RDO Chain:S ((5-105))
---------AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR-
General information:
TITO was launched using:
RESULT:
Template:
2RDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 344604 for 4656 contacts (74.0/contact) +
2D Compatibility (PS) -10090 + (NN) -760 + (LL) 392
1D Compatibility (HY) 4400 + (ID) 900
Total energy: 337646.0 ( 72.52 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_2RDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDO-query.scw
PDB file :
Tito_Scwrl_2RDO.pdb
: