Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYMKNEQDIRSQGVYYSAGLRSYLTKVYNYMALALGITGLIAFLTVFFDLFQVIYSNPVLSIVVILSPIVLVFYMSHRLQYLSAQSTVTVFFLFSVLMGLSLSYIFIVYTTENIARAFFITSIMFGSMALYGNSTKKDLTSMGSFLIMGIWGLIIASIVNLFLGSSPL----YFAISFISVIVFTLMTAYDAQRIKDVYYRYNDGSEAVTTKLAIFGATNLYFDFINVFLNLLRLLNLFNNRD
4PGS Chain:A ((102-215))
--------------------------------------------------------------------------------------------------------------------EAFGSTFVIFAVLGTIGAKMKKDLSFLWSFLLVAVLALAVVGIFNIF---SPLNSAAMMAYSVIGTIVFSLYILYDLNQIK---HRH------ITEDLIPVMALSLYLDFINLFINLLRFFGILSS--
General information:
TITO was launched using:
RESULT:
Template:
4PGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65734 for 711 contacts (-92.5/contact) +
2D Compatibility (PS) -11229 + (NN) -2798 + (LL) 11224
1D Compatibility (HY) -16800 + (ID) 2250
Total energy: -87587.0 ( -123.19 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_4PGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PGS-query.scw
PDB file :
Tito_Scwrl_4PGS.pdb
: