Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDIVLATGGTGGHIFPAITLARAIKRQGYDSILFADKKTGKNTDVKDYTLPLN--KPGGNKFRFFLLLIYSCVL---ALYQIRKL----KPKLVIGFGGYASFPTLLAAKVLSIPIILHEQNAVLGRVNKFFFNSAELIATSFPETKYAKGNKCVFIGNFV--DIKA-----KSHSSTKKILTVLIIAGSQGANFFDDVVSSVICNLPIEIRKKIRVVQQCMKKNMNKVEGLY-KGGQVICELSEFFDDMGSRLTDAHLVISRAGATSIAEITLARRPAIYIPYPCSKDDHQFYNAEYIKDSGAAVVVEQNSEVKKNLTKLLVNLLGDSQKLRDMANNTKKIRIKNGVTEFIRIVIHKLG |
| 1F0K Chain:A ((9-307)) | --LMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPG---AFPNAEV-VGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKL----GDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPF-QHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F0K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185964 for 2360 contacts (-78.8/contact) +
2D Compatibility (PS) -30180 + (NN) -11053 + (LL) 704
1D Compatibility (HY) -15600 + (ID) 4700
Total energy: -246793.0 ( -104.57 by residue)
QMean score : 0.457
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