Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEQKIQAFEWFRALRDRVVESFLLIEGQSPTDPKIEKRKWDRPGGGGGESTIIY-GDVFEKVGVNISKVYGKFADSVVNEIPGASESNGEFWASGISLVSHMQSPLVPAAHMNTRLIYTSKQ------WFGGGMDFTPTYKNEEDYKYIHESIKTTCDKFDAEYYLKFKEQCDNYFFLQHRKEPRGIGGIFYDNLNSGRWENDFEFTKAVGETFLKIYLHIIRQHMRKPWTKEQRETQLIKRGRYVEFNLLYDRGTKFGLMTDGNPDAIMMSMPPLVKWM |
3E8J Chain:A ((41-280)) | ---------------------------------------KWTREGGGGGRTRVIANGAVIEKGGVNFSHVYGK-------------GCN--YQAMGVSLVIHPKNPHVPTSHANVRLFVAEKEGKEPVWWFGGGFDLTPYYAVEEDCYYFHHVAQELCRPFGADVYERFKAWCDEYFFIPHRNEARGIGGLFFDDLNEWPFEKCFAFMQAVGKGFIDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILMSLPPRARWG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3E8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -76676 for 1676 contacts (-45.7/contact) +
2D Compatibility (PS) -23081 + (NN) -10089 + (LL) 4020
1D Compatibility (HY) -19600 + (ID) 5500
Total energy: -130926.0 ( -78.12 by residue)
QMean score : 0.403
|
|
|