Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADVTNVSTASIVRFSRKMTHQGFQELKIAISRYLPE-DIATNPHLEL-IENESVETLKNKMIARATNTMRFVATNIMDAQIDAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVRLLHETHLLVSTFATHDDRDCMIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPVAQIADYALIYGRTDENEMRMAATTSLFAQLFTVDILYYRFVALNYHAILDCITQSKMALDNYRKHLATIDFKH
4IVN Chain:A ((6-250))
--NLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYKGYSDFRMALAVDLSQT---------GDICDVSAQS--------AVDSLQDTAKLIDRKSLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFAVSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARP-EGPLTGGAFASKVGALLLVDVL-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4IVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -216700 for 1974 contacts (-109.8/contact) +
2D Compatibility (PS) -24995 + (NN) -10150 + (LL) 4804
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -264741.0 ( -134.11 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_4IVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IVN-query.scw
PDB file :
Tito_Scwrl_4IVN.pdb
: