Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDKTLQQIDKLICSWLKQIDNVIPQLIMEMTTETKRHRFDLVTNVDKQIQQQFQQFLATHFPEHQLLAEEKSNEMITNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEEPPSLKLEDAIISFNAQVMNLDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVLKILNANGGYQKYR
3RYD Chain:A ((11-273))
--DKTLQQIDKLICSWLKQIDNVIPQLIMEMTT-TKRHRFDLVTNVDKQIQQQFQQFLATYFPEHQLLAEEKSN-MITNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEEPPSLKLEDAIISFNAQVMNLDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVLKILNANGGYQKYR
General information:
TITO was launched using:
RESULT:
Template:
3RYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182137 for 2183 contacts (-83.4/contact) +
2D Compatibility (PS) -28656 + (NN) -15545 + (LL) 468
1D Compatibility (HY) -39600 + (ID) 12950
Total energy: -278420.0 ( -127.54 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3RYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYD-query.scw
PDB file :
Tito_Scwrl_3RYD.pdb
: