Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLETITLAHIYEEQGFFEEALQIYTNILKKTPDNTEALKQMKRLEKIQKNCAPFKHDALLKQHYLNFIKGDRLSVENLEKWLVEWN
1NA3 Chain:A ((48-90))
------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NA3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7367 for 267 contacts (-27.6/contact) +
2D Compatibility (PS) -5011 + (NN) -6188 + (LL) 3468
1D Compatibility (HY) -800 + (ID) 650
Total energy: -16548.0 ( -61.98 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_1NA3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NA3-query.scw
PDB file :
Tito_Scwrl_1NA3.pdb
: