Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTFEPYPFERLRALFKEITPKK--KGLDLGIGEPRFETPKFIQDALKSHTHSLNIYPKSAFEESLREAQRGFFKRRFK--IELKENELVSTLGSREVLFNFPSFVL--FDYPNPTIAYPNPFYQIYEGSAQFARAKSLL--MPLVKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELIAWVKLALKHDFILINDECYSEIY--ENTPPSSLLEACMLADNGAFKNVLVIHSLSKRSSAPGLRSGFIAGDSSLLEKYKAFRTYLGYTSANAIQKASEVAWLDDRHAEFFRNIYANNLKLARKIFKETL---IYPYSFYAYLPVKDGEN--FAKTLYQNEGITTLPALYLGRN----HIGADYVRLALVYDTSLLEKPLE-IIEAYRENYA |
| 3JTX Chain:A ((9-396)) | --LKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNP--GIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGR--SRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLYR---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JTX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145983 for 3161 contacts (-46.2/contact) +
2D Compatibility (PS) -39803 + (NN) -20632 + (LL) 324
1D Compatibility (HY) -24800 + (ID) 7350
Total energy: -238244.0 ( -75.37 by residue)
QMean score : 0.497
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