Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIVQGALDTDKLLKDYQEEACTKNFGAFCVFVGIVR----EEGNVQGLSFDIYEALLKTWFEKWRHQP-KDLGV-VLKMAHSVGDVLIRHSSFLCVLMGANTKNALKLYEYFFKNFKRNAPIWKCYLSDNERIYAKKKDHLLKGSGLLA
2OMD Chain:A ((18-130))
----------AERILSEYQ---VPEDCGAQVLFLGIPRNAPEDGGNIEALEYEAYPEMAIKEMEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFK--------------------
General information:
TITO was launched using:
RESULT:
Template:
2OMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90771 for 726 contacts (-125.0/contact) +
2D Compatibility (PS) -11771 + (NN) -6291 + (LL) 2576
1D Compatibility (HY) -9600 + (ID) 1650
Total energy: -117507.0 ( -161.86 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2OMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OMD-query.scw
PDB file :
Tito_Scwrl_2OMD.pdb
: