Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPESNLKSLGAKTPYIFEYNSDLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVQLLEPKYLEVYGDFVSRGGIAIKPFVNYAI--KEYQDFKEKRLLDAK
4FGC Chain:A ((21-154))
--------------NYLFEYAPDVLESFPNKHVNRDYFVKFNCPEFTSLAPKTGQPDFATIYISYIPDEKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPRYIEVWGKFTPRGGISIDPYTNYGKPGTKYEKMAEYRMMNHD
General information:
TITO was launched using:
RESULT:
Template:
4FGC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74942 for 932 contacts (-80.4/contact) +
2D Compatibility (PS) -13930 + (NN) -4931 + (LL) 592
1D Compatibility (HY) -16400 + (ID) 3650
Total energy: -113261.0 ( -121.52 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_4FGC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FGC-query.scw
PDB file :
Tito_Scwrl_4FGC.pdb
: