Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLRAAGISTAQFDCIAQIGLD--KEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTKTGREKH---ITLTEKGQACYRENVPKQ-EAFQQAQFDKLTRDEQKELLKLLKKLGE
3ZPL Chain:A ((44-162))
-------------------------LDRQLQRDAGMPHVYYGLLVKLAESPRRRLRMTELAKYAKITRSRLSHAVARLEKNGWVRREDCPSDKRGQFAILTDEGYEVLRRTAPGHVDAVRQAVFDRLTPEQQKSLGEIMRIVAE
General information:
TITO was launched using:
RESULT:
Template:
3ZPL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29523 for 725 contacts (-40.7/contact) +
2D Compatibility (PS) -12401 + (NN) -6211 + (LL) 2412
1D Compatibility (HY) -6000 + (ID) 1500
Total energy: -53223.0 ( -73.41 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_3ZPL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZPL-query.scw
PDB file :
Tito_Scwrl_3ZPL.pdb
: