Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDFMTLEKVREKGPLVHNITNIVVANDSANGLLAIGASPIMASAKEEMDELAKMADVLVINIGTLDGELVTAMKIAGRAANVAGTPVVLDPVGVGATSYRRKVVQELLAEIQFAAIRGNAGELAAIAGEAWEAKGVDAGVGSADVLSIAGKVANEWSTVVIISGEVDVISDGTRFAKVANGSALLPRITGSGCLLSAVCGSFIAVQDDAFRASVEACASYAVASEYAEMELERKLPGSFRPLFLDALASWSVEKTRAKAKIQESGEHK
1EKQ Chain:A ((10-267))
------LTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVG--------------GDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAG-LLTSVVGAFCAVEENPLFAAIAAISSYGVAAQLAAQQTADKGPGSFQIELLNKLSTVTEQDVQEWATIE------
General information:
TITO was launched using:
RESULT:
Template:
1EKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185411 for 2208 contacts (-84.0/contact) +
2D Compatibility (PS) -26067 + (NN) -7027 + (LL) 1452
1D Compatibility (HY) -21200 + (ID) 5700
Total energy: -243953.0 ( -110.49 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_1EKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EKQ-query.scw
PDB file :
Tito_Scwrl_1EKQ.pdb
: