Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VIYYICALYTFISALVSFGFSLDALLKSRKVNGDALINAKYAVSRSLSLLIVALGLFIFKSDAFLVALSLVMIGAQLFDGIIGIKI-STFKTVGPLLTAVGNVIMLILFLTI
1FRY Chain:A ((6-24))
---------------------------------------------------------------------------------LGRKIAHGVKKYGPTVLRI------------
General information:
TITO was launched using:
RESULT:
Template:
1FRY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5216 for 81 contacts (-64.4/contact) +
2D Compatibility (PS) -1721 + (NN) 792 + (LL) 9136
1D Compatibility (HY) -1600 + (ID) 300
Total energy: 1091.0 ( 13.47 by residue)
QMean score : -0.155
(partial model without unconserved sides chains):
PDB file :
Tito_1FRY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FRY-query.scw
PDB file :
Tito_Scwrl_1FRY.pdb
: