Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTEVSMSLTGHLKELRTRLLIILLSFFLAFFVGLFVSKPLILFLQKDDLPK--EVILHVFKVTDAFQIYIEMAFVIGLVLVFPVILYQLWAFVKPGLHASEQRITLRYIPI---TFLLFLFGVVFSYLITFPFILKFMFQFA-AELGVETTIGLATYFQFLLQIVLSFGVLFELPMVIMLLTRLSLITPNGMRHSRKYAYFCLLIIAAFIAPPEILSHLMITIPLIGLYEISIVVSGLTVRRMDKEMNNV
4HTS Chain:A ((9-236))
---------EHLRELRYRLIISIIAFLIGSGIAFYFAKYVFEILAAPILKSYPEVELITLSPTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKR---AFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIA-PDVSTQVLMAIPLLLLYEISIFLGKLATR---------
General information:
TITO was launched using:
RESULT:
Template:
4HTS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -241850 for 1612 contacts (-150.0/contact) +
2D Compatibility (PS) -22762 + (NN) -5948 + (LL) 1852
1D Compatibility (HY) -36400 + (ID) 3900
Total energy: -309008.0 ( -191.69 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_4HTS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HTS-query.scw
PDB file :
Tito_Scwrl_4HTS.pdb
: