Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNILLVCNAGMSTSFLVEKMKAAGTEQGVEANIWAVSDAELHENWEKADVILLGPQVGYLKGNTEKVVGGK-IPVEVINMLDYGRVNGAAVLERAIELIG
2L2Q Chain:A ((6-100))
--NILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYGTMNGEKVLQLAI----
General information:
TITO was launched using:
RESULT:
Template:
2L2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65727 for 653 contacts (-100.7/contact) +
2D Compatibility (PS) -9840 + (NN) -1247 + (LL) 584
1D Compatibility (HY) -10400 + (ID) 2100
Total energy: -88730.0 ( -135.88 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_2L2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L2Q-query.scw
PDB file :
Tito_Scwrl_2L2Q.pdb
: