Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMIAASIMCADSLHLADELRALEQANVKMLHCDVMDGVFVENAAMGAYVLQDIKNNTKMLLDIHLATVNPDKFVDLYAAIKPAYMSFHLEASRD-VNATINHIRELGIRPSIAISPDTEIEQIYPFL---GKVDMVLMMTVNPGFAGQKFQHHVLEKIKKLQKELESHTNKPLIEVDGNIFEETVRLLEPIGADVYVVGTAALFNEKAGSYTEKLAPLREIIQER
1H1Y Chain:A ((9-222))
---IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLD----IEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPG---EVISALRKSVE--
General information:
TITO was launched using:
RESULT:
Template:
1H1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184356 for 1826 contacts (-101.0/contact) +
2D Compatibility (PS) -22376 + (NN) -5919 + (LL) 820
1D Compatibility (HY) -18000 + (ID) 3850
Total energy: -233681.0 ( -127.97 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1H1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H1Y-query.scw
PDB file :
Tito_Scwrl_1H1Y.pdb
: