Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVEDFDFDLPEELIAQTPLLDRTSSRLMVLDKESGDIKDQHFTDIISYLNEGDALVLNDTRVLPARLHGIKDETGAHIEVLLLKQKEGNAWETLVKPAKRIRKGATITFGDGALKATCLEELEHGGRILEFSYEGIFYEVLEQLGEMPLPPYIKEQLADQDRYQTVYAKENGSAAAPTAGLHFTEDLLEQISAKGVEIIFVTLHVGLGTFRPVDVEDTTNHKMHSEFYRLTEESAERINKIKAQGGKVVAVGTTSIRTLETIASRHDGKLVAESGWTEIFISPGYTFQAVDALITNFHLPKSTLIMLVSALSDRTKILAAYNHAVEEQYRFFSFGDAMFIH |
1VKY Chain:A ((16-346)) | ---SEFDYELPPELIAQEPVEPRDASRLMVLHRKTQRIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYA-RK---ASIEILLIERLEEGIWKCLVRPGQKVKKGTELVI-DEDLSAVCLGRGEDGTRILKFQPQD--DRLIFEKG--------------------------------TAGLHFTPELIEKLKKKGVQFAEVVLHV------------------HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIARLPEQEEYV--GKTDLFIYPPFEFKLVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202958 for 2205 contacts (-92.0/contact) +
2D Compatibility (PS) -29541 + (NN) -3955 + (LL) 3500
1D Compatibility (HY) -31600 + (ID) 6550
Total energy: -271104.0 ( -122.95 by residue)
QMean score : 0.571
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