Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNVKVYVTLKKSVLDPQGVAVKDAAKSMGYEEVEDVRIGKFMELKVAKSDRDIHEVLNEMCDKLLTNPVMEDYRYEIEEA
1T4A Chain:A ((2-80))
-YKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRDLDVLVKEMCEKLLANTVIEDYRYEVEE-
General information:
TITO was launched using:
RESULT:
Template:
1T4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4884 for 418 contacts (11.7/contact) +
2D Compatibility (PS) -7917 + (NN) 1561 + (LL) 412
1D Compatibility (HY) 800 + (ID) 1200
Total energy: -1460.0 ( -3.49 by residue)
QMean score : 0.097
(partial model without unconserved sides chains):
PDB file :
Tito_1T4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T4A-query.scw
PDB file :
Tito_Scwrl_1T4A.pdb
: