Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VNLEKELKEYLGFDEFRPGQKEVIETALAKQNCFAMLPTGTGKTICYQLAGHLMDGLVLIVSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQILASIHS--YKFIFLSPEMLNNETVKNLLLKQKISLFVIDEAHCISQWGHDFRPDYLMLGRFIQEAKFPVT--MVLTATATKKVRADILTQLHLTDCAQIVYSVNRPNIS-LQVEKFSNQHVKKDRLYELVRKLQ----TPGIIYFSSKKLAESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAGRDGEDSVAILLYANGDEFIQMQLADQDIPDANLMNLTTEQRKTLPETEQRFIDYYQRSGLSTKELTDKMDYRKKWKRANLQQFIGYLHTTDCRRNYILRYFEEAPLEVTPENCCDLDGAEIINFEKRAKIKQKEIPTWEAYLAYLLQ |
| 4TMU Chain:A ((37-364)) | ------LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLISLMKDQVDQLLANGVA-AACLNSTQSREEQQAVLAGCRTGQVRLLYIAPERLMMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQL--RARFPAVPFMALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP-------LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRG-ISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD----------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TMU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -270535 for 2542 contacts (-106.4/contact) +
2D Compatibility (PS) -35495 + (NN) -18797 + (LL) 11960
1D Compatibility (HY) -26800 + (ID) 6750
Total energy: -346417.0 ( -136.28 by residue)
QMean score : 0.573
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