Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKMLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVDNIIMPL---VGVLLGGLDFTDLSFKVGKSVIQYGAFIQSIVDFIIIAFAIFIFVKVLTSFIKKKEQTVEETPVPPTEEYLKEIRDLLKEQQK
2OAR Chain:A ((24-148))
---MLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQSDVGILRIGIGGGQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGEV--EQPGDTQVVLLTEIRDLLAQTN-
General information:
TITO was launched using:
RESULT:
Template:
2OAR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43883 for 592 contacts (-74.1/contact) +
2D Compatibility (PS) -12548 + (NN) -484 + (LL) 696
1D Compatibility (HY) -10400 + (ID) 2200
Total energy: -68819.0 ( -116.25 by residue)
QMean score : 0.199
(partial model without unconserved sides chains):
PDB file :
Tito_2OAR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OAR-query.scw
PDB file :
Tito_Scwrl_2OAR.pdb
: