Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMEKKHFDLNDVVEMKKPHPCGTNRFKIIRMGMDIRIKCEGCGHSVMIPRREFE--RKVKKILVKAEQE
4POF Chain:A ((140-162))
---------------------------------------CKDCGHEMIVPQKPYESLEKVKK--------
General information:
TITO was launched using:
RESULT:
Template:
4POF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3369 for 52 contacts (-64.8/contact) +
2D Compatibility (PS) -2290 + (NN) 407 + (LL) 3996
1D Compatibility (HY) -2800 + (ID) 500
Total energy: -4556.0 ( -87.62 by residue)
QMean score : 0.264
(partial model without unconserved sides chains):
PDB file :
Tito_4POF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4POF-query.scw
PDB file :
Tito_Scwrl_4POF.pdb
: