Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVIRKFCTYQKLRVKAFTLLECLVALVTITGALLVYQGLTKLLAQQIVVMSSSSQSEWVLLTQQLNAEFEGAHLEYLRQNKLYLRKQDKIVTFGKSNKDDFRKTGYDGRGYQPMVYGLDNCQMSQTKSMVKLVFYFKDGLKRTFYYDFKEET |
| 1SEF Chain:A ((37-92)) | -------------------------------------------------------------LVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQ---QTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SEF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 9185 for 284 contacts (32.3/contact) +
2D Compatibility (PS) -5876 + (NN) -240 + (LL) 6876
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: 4945.0 ( 17.41 by residue)
QMean score : 0.082
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