Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKKILFGTGLAGVGLLAAAGYTLTKKVTDYKRQQITQTLREFFSQMGDIQVF------YFNEFESDIKMTSGGLVLEDGRIFEFIYRQGVLDYVEVSK
1KS9 Chain:A ((221-288))
----------------------HTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESE-------
General information:
TITO was launched using:
RESULT:
Template:
1KS9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4405 for 286 contacts (15.4/contact) +
2D Compatibility (PS) -6268 + (NN) 3456 + (LL) 1828
1D Compatibility (HY) -2000 + (ID) 950
Total energy: 471.0 ( 1.65 by residue)
QMean score : -0.022
(partial model without unconserved sides chains):
PDB file :
Tito_1KS9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KS9-query.scw
PDB file :
Tito_Scwrl_1KS9.pdb
: