Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKG-SNGE--READFINVVMWGRLAETLASYGTKGSLISVDGELRTRKY-EKDGQTHYITEV---LASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF
1EQQ Chain:A ((7-115))
--NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1EQQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15178 for 638 contacts (-23.8/contact) +
2D Compatibility (PS) -11395 + (NN) -3220 + (LL) 2116
1D Compatibility (HY) -8000 + (ID) 1900
Total energy: -37577.0 ( -58.90 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_1EQQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EQQ-query.scw
PDB file :
Tito_Scwrl_1EQQ.pdb
: