Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELLLALLLWNILVFATYAIDKRRAIRGAWRISEKTLLIESLLLGGFGAFLGGEVFRHKTTKWYFRLVWYIGMIIDLAIIWLIWCY
1LNG Chain:A ((7-23))
-------------------YIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKGNKLQ
General information:
TITO was launched using:
RESULT:
Template:
1LNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1400 for 66 contacts (-21.2/contact) +
2D Compatibility (PS) -1566 + (NN) 1261 + (LL) 2784
1D Compatibility (HY) 0 + (ID) 250
Total energy: 829.0 ( 12.56 by residue)
QMean score : -0.268
(partial model without unconserved sides chains):
PDB file :
Tito_1LNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LNG-query.scw
PDB file :
Tito_Scwrl_1LNG.pdb
: