Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNKKNNYDLMYFIPLVFLIYPIGGILYYHYPFWTLFFTLAFVGAYLYSVIIRGESKYHMIAWSTMLTYIFYMTIFINSGFIWYIYFLSNLLVYRFRDKLKSFRFISFACTLATVVFLCFFKASDFGDRIMFLIVPIFCIGYMWIAIENRNSEEQREKIAEQNQYINILSAENERNRIGRDLHDSLGHTFAMMTLKTELALKLLEKRNYDKVQKELSELNHISHQSMSEVRQIVSNLKYRTVVEEIDELYRLFQLSNIKLTVVNKLETSQLSPVTQSTITMILKELSNNIVKHAEADSVELSLVRQGATINIEMIDNGC--GFTNLDGDEFHSIQERLTIVEGTLTILSRSKPTHIQVVLKEV |
3GIF Chain:A ((14-201)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------DANERIAELVKLEERQRIARDLEDTLGQKLSLIGLKSDLARKLIYK-DPEQAARELKSVQQTARTSLNEVRKIVSSMKGIRLKDELINIKQILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGE-----HGLLGMRERLEFANGSLHIDTENGTKLTMAIPNN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47043 for 1096 contacts (-42.9/contact) +
2D Compatibility (PS) -19132 + (NN) -4265 + (LL) 15084
1D Compatibility (HY) -11600 + (ID) 2600
Total energy: -69556.0 ( -63.46 by residue)
QMean score : 0.437
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