Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANDWKKSARGLALMTLEEVFDKG-AYSNIALNKSLKKSRLSDKDRALVTEIVYGTVARKITLEWYLSHFIV-DRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAV--TIAKNRGNKKGAEKLINAVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDLSQKQTIKETLNVRDSHIAETALVADSG--NFASTSF-----------------FQDGLITIQDESSQLVAPTLKVSGNDQVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASKAHEYFLEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRKGGIITYSTCTIFEEENFQVIEKFLENHPNFEQVELSHTQEDIVKRGCISISPEQYHTDGFFIGQVKRIL |
1SQG Chain:A ((5-426)) | ------RNLRSMAAQAVEQVVEQGQSLSNIL---PPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLY-TRIPPHAALAETVEGAIAIKRPQLKG---LINGVLRQFQRQQEELLAEFNASDARYL----HPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLR---------INRTHHSRDSWLA---LLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE-TGTPEQPGKQNL----PGAEEGDGFFYAKLIK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SQG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131989 for 3345 contacts (-39.5/contact) +
2D Compatibility (PS) -42651 + (NN) -19788 + (LL) 3076
1D Compatibility (HY) -28400 + (ID) 7050
Total energy: -226802.0 ( -67.80 by residue)
QMean score : 0.409
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