Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKFQFFLLVEAVVLVMGLMKILSDDWTSFIFILALILLALRFYNNDSRHNFLLTTSLLLLFLIFMLNPYIIAAVVFAVLYVLINHFSQVKKKNRYALIQFKNHQLDVKTTRNQWLGTDQH-ESDF-YDFEDINIIRISGTDTIDLTNVIVSGQDNVIIIQKVFGDTKVLVPLDVAVKADISSVYGSVQYFDFEEYDLRNES--IKLSQEEEYYLLKRVKLVVNTIAGKVEVSRK |
3KD1 Chain:E ((480-610)) | ---------------------------------------------------------------------------------------SQRKEHKGYMLAAQRNGEIIKEALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRT-----EVAGMTA-----QMALKVTCNSLYGALGNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEAFV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3KD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 27821 for 734 contacts (37.9/contact) +
2D Compatibility (PS) -12859 + (NN) -2192 + (LL) 11596
1D Compatibility (HY) -6000 + (ID) 1700
Total energy: 16666.0 ( 22.71 by residue)
QMean score : 0.007
|
|
|