Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYKTIKSDGIVEEEIKKSRFICHLKRVESEEEGRNYITQIKKAHYKANHSCSAMVIGEKGDIKRS--SDDGEPSGTAGIPMLTVLEKQGLTNVVAVVTRYFGGIKLGAGGLIRAYSGSVANTIKEIGVVEVKEQIGIRIQLTYPQYQTFDNFLKEHHLQEFETEFLEAVTCKIYVDPKEFEHTITNLTEFYQGKALLTEEGSQIVEIPFKAETDK
1VI7 Chain:A ((16-199))
-----------VVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEEE------------
General information:
TITO was launched using:
RESULT:
Template:
1VI7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71382 for 1335 contacts (-53.5/contact) +
2D Compatibility (PS) -19978 + (NN) -4654 + (LL) 1708
1D Compatibility (HY) -11200 + (ID) 3000
Total energy: -108506.0 ( -81.28 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_1VI7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI7-query.scw
PDB file :
Tito_Scwrl_1VI7.pdb
: