Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCKYKAIIFDMDGVLFDTELFYYKRRERFLKQHGITIDHLPMNF--FIGGNMKQVWKSVLGDQYDTWDIDKLQQDYSRYKEDNPLPYKDLIFQDCKRVIEKLHHKGYLLGLASSSTRHDIMLALESFNLDTYFKVILSGEEFSESKPNPAIYNRAAELLDIPKQQILIVEDSEKGITAGIAAGIDVWAIEDKYFGMNQSQANVLVSDLSQFFVKLDNY
2YY6 Chain:A ((2-208))
----RVILFDLDGTLIDSAKDIALALEKTLKELGLE-EYYPDNVTKYIGGGVRALLEKVLKDKFREEYVEVFRKHYL----ENPVVYTK-PYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTALALWGYVKLNSQIPDFTLSRPSDLVKLMDN-
General information:
TITO was launched using:
RESULT:
Template:
2YY6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105613 for 1751 contacts (-60.3/contact) +
2D Compatibility (PS) -22327 + (NN) -13161 + (LL) 1252
1D Compatibility (HY) -12400 + (ID) 2900
Total energy: -155149.0 ( -88.61 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_2YY6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YY6-query.scw
PDB file :
Tito_Scwrl_2YY6.pdb
: