Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALFSKKDKYIRISPNKALGSSDKRSLPEVPDELFAKCPSCKHMIYQKDLGLA-KICPACSYNFRISAQERLLLTVDEDSFEELFTGIETKDPLNFPN---YREKLAATRQKTNLDEAVVTGLAKIKGQTTALAIMDSHFIMASMGTVVGEKLTRLFELATEKKLPIVIFTASGGARMQEGIMSLMQMAKVSAAVKRHSNQGLFYLTILTDPTTGGVTASFAMEGDIILAEPQALVGFAGRRVIETTVREDLPEGFQKAEFLLEHGFVDAIINRTELRDCIAQLIAFHGNEVGHE
2F9Y Chain:B ((23-275))
---------------------------------VWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYK------QKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPN
General information:
TITO was launched using:
RESULT:
Template:
2F9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165956 for 2035 contacts (-81.6/contact) +
2D Compatibility (PS) -26537 + (NN) -14172 + (LL) 2220
1D Compatibility (HY) -22000 + (ID) 5700
Total energy: -232145.0 ( -114.08 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_2F9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F9Y-query.scw
PDB file :
Tito_Scwrl_2F9Y.pdb
: