Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLIWSHLFAIVSILGIWYYHVKIDHLMVILLASVLSLEMGFIAYYSRNIFIRLLASLGLLFFYPQSLGIFLSLVSLEWSTKDIWQSNHFMQYMAYLLAILFIISSALLSLKLLVNAYDISKRYQLATVIPVMLFSSFAFCLEKSGSLGLEGIILNPSAFFNGIQTNMANLDFKALSCLFLVQLLLWGILMED |
2J5D Chain:A ((176-186)) | ---------------------------------------------------------------------------------------------------------------------------------------AIGLGIYIGRR------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2345 for 35 contacts (-67.0/contact) +
2D Compatibility (PS) -1092 + (NN) -295 + (LL) 17940
1D Compatibility (HY) -1200 + (ID) 0
Total energy: 13008.0 ( 371.66 by residue)
QMean score : -0.163
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