Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGRLIALGLVSLGALELYKNRKTIKDSYQNTKIETDSAKLKLERIKNDLAIISQEKEKIRLISQELNHKFQVFNKDIQPRLEEINQRMA--KYQEKDE
3Q8X Chain:B ((226-260))
---------------------------------------------------------------LEKELNRK--VSGKEIQPTLERIEQKMVLNKHQETPE
General information:
TITO was launched using:
RESULT:
Template:
3Q8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1492 for 116 contacts (-12.9/contact) +
2D Compatibility (PS) -3477 + (NN) -531 + (LL) 5664
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -2736.0 ( -23.59 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_3Q8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q8X-query.scw
PDB file :
Tito_Scwrl_3Q8X.pdb
: