Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKQNNRMTIYYKEENLKKYEALKSFFEADEHISSMTTSATFLFLVDICYQLFIESNSGQSYSERLKQFLNSKNSDVEELKNKVKLVSRQLDQ------LLYLELTNFHALTKGNDFDIQDLESVHSRFDPMQHELIARIDDIIKEDVARGQAMKHSH
2D5K Chain:A ((8-67))
--------------------------------------------------------------------------------------VVKELNQQVANWTVAYTKLHNFHWYVKGPNFF-----SLHVKFEELYNEASQYVDELAERILAVGGNPVGTL
General information:
TITO was launched using:
RESULT:
Template:
2D5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7795 for 270 contacts (-28.9/contact) +
2D Compatibility (PS) -5873 + (NN) -2549 + (LL) 7188
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -13529.0 ( -50.11 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_2D5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5K-query.scw
PDB file :
Tito_Scwrl_2D5K.pdb
: