Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTISSAEWEIMRVVWAQQNTTSNEILAVLLEKYDWTPSTVKTLLRRLLDKGYVSREKMGKGFSYSPLIDEDLAMMSEVDSVFQKVCQTKHVAIVRHLLESIPMTEKDRLNLQSSLEAKKGKTLERVACNCIPGQCQCH
1OKR Chain:A ((8-123))
--ISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK--------------------
General information:
TITO was launched using:
RESULT:
Template:
1OKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57251 for 682 contacts (-83.9/contact) +
2D Compatibility (PS) -12402 + (NN) -5877 + (LL) 1304
1D Compatibility (HY) -9600 + (ID) 1750
Total energy: -85576.0 ( -125.48 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_1OKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKR-query.scw
PDB file :
Tito_Scwrl_1OKR.pdb
: