Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFAKEYPTTVLLVSLTTLVFLLMQLTYGSQAESSQVIFQFGGIQGDYLKAYPT---NLWRLISPIFVHIGWEHFLLNGLALYFVGQMGESIWGSLRFLILYILSGLM-GNIFTLFFTPHVVAAGASTSLFGVFSAIAIAGYFGKNP----YLKQVGKSYQVMILLNLFFNIFTPGVSLAGHVGGLVGGVLVAIFLTKQNGSLLFKTWQSILALMIFIIVSISLIGLSLV
4QNZ Chain:A ((9-179))
--------PVTWVMMIACVVVFIAMQIL-GDQEVMLWLAWPFD----------PTLKFEFWRYFTHALMHISLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF--GGLSGVVYALMGYVWLRGE--RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLN-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QNZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129365 for 1279 contacts (-101.1/contact) +
2D Compatibility (PS) -16528 + (NN) -4006 + (LL) 5216
1D Compatibility (HY) -18800 + (ID) 2050
Total energy: -165533.0 ( -129.42 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_4QNZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QNZ-query.scw
PDB file :
Tito_Scwrl_4QNZ.pdb
: