Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKIKIVTDSSITIEPELIKELDITVVPLSVMIDGTLYSDNDLKAQGEFLNLMRGSKELPKTSQPPVGVFAEIYEKLMNEGAEHIIAIHLTHTLSGTIEASRQGANIAGADVTVIDSTFTDQCQKFQVVEAAKLAKEGADLDTILARVEEVRQKSELFIGVSTLENLVKGGRIGRVTGLLSSLLNIKVIMELTNHELVPIVKGRG--------LKTFSKWLDNFVESAQTRKIAEIGISYCGKADMANNFKEKLAVLGAPIS---VLETGSIIQTHTGEDAFAVMVRYE |
| 2DT8 Chain:A ((2-273)) | --RITLVTDSTSDLPQDLRGRLGVRVVPLYVNLSGAIYRDWEEITPTEIFQKVREGAAFPTTSQPSPEDFARVYREALEE-ADHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQAASLGVGMMVLRAKELLEEGQSLEAVLAELERLRRDHFVRFSVATLEFLKRGGRIGGAQAFLGTLLNLKPVLTLKEGRVEAAGRARGEKKAREEILKAFRAW-------AEGRKRIRAYFLYSGDEDAVAALRQEVLASGLPVEEALVNELGAVIASHTGPGTYGFYAYSL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2DT8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -142954 for 2190 contacts (-65.3/contact) +
2D Compatibility (PS) -29083 + (NN) -15935 + (LL) 428
1D Compatibility (HY) -16800 + (ID) 4250
Total energy: -208594.0 ( -95.25 by residue)
QMean score : 0.568
|
|
|