Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYREITAVE-HDRFVSESNQTNLLQSSNWPKVKDNWGSQLLGFFDGETQI-ASASILIKSLPLGFSMLYIPRGPIMDYSNLDIVTKVLKD-LKAFGKKQRALFIKCDPLIYLKMVNAKDFENSPDEKEGLIAIDHLQRAGADWTGRTTDLAHTIQPRFQANLYANQF-----GLDKMSKKTRQAIRTSKNKGVDIQFG-SHELLEDFAELMKKTEDRKGINLRGIDYYQKLLDTYPNNSYITMASLDVAKRLEKIEKECQIAQSERIKSLELNREKKVKQHQGTIDRLNKEIDFLKEAQKAYDRDIIPLAATLTLEFGNTSENIYAGMDDYFKSYSAPIYTWFETAQRAFERGNIWQNMGGIENDLS-GGLYHFKSKF-EPIIEEFIGEFNIPVNRLLYKASNYVYALRKKRNS |
| 1NE9 Chain:A ((10-321)) | ------AVERYEEFMRQSPYGQVTQDLGWAKVKNNWEPVDVYLEDDQGAIIAAMSMLLGDTPTDKKFAYASKGPVMDVTDVDLLDRLVDEAVKAL--DGRAYVLRFDP-----EVAYSDEFNTTLQDHGYVT---RNRNVAD-----AGMHATIQPRLNMVLDLTKFPDAKTTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRM-----------QAAFD--------------ADTMRIFVAE--REGKL------------------------------LSTGIALKYGRKIWYMYAGSMD-GNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGEIDKVLDPEVYAELVKD--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NE9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -43587 for 2417 contacts (-18.0/contact) +
2D Compatibility (PS) -31565 + (NN) -3679 + (LL) 6764
1D Compatibility (HY) -18000 + (ID) 4850
Total energy: -94917.0 ( -39.27 by residue)
QMean score : 0.365
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